Pathway Studio 9 Training Manual
The manual is applicable to:
- Pathway StudioŽ Desktop 9
- Pathway Studio PC-Client 9 (Enterprise)
- MedScan ReaderŽ version 5
This Training Manual provides descriptions and hands-on exercises to support learning to use Pathway Studio 9 and MedScan Reader 5. (Included are two example data files for use in the exercises. While the exercises are designed using the ResNet Mammalian database, the basic workflows are the same for the ResNet Plant or ChemEffect database as well.)
Title |
Type |
Size |
File type |
|---|---|---|---|
| Training Manual Pathway Studio 9 Desktop and Pathway Studio 9 Enterprise PC-Client * | Basic Documentation | 12 Mb | |
| Pathway Studio 9 Training Material Supplemental Files * | Basic Documentation | 487 Kb | ZIP/Text |
Additional Pathway Studio Training Material
Below are additional training tools for using Pathway Studio.
Title |
Type |
Size |
File type |
|---|---|---|---|
| Guide to Building Pathways in ResNet 9 Mammalian * | Basic Documentation | 2 Mb | |
| Guide to Building Pathways in ResNet 4 Plant * | Basic Documentation | 3 Mb | |
| Guide to Building Pathways in DiseaseFX * | Basic Documentation | 2 Mb | |
| Guide to Building Pathways in ChemEffect 4 * | Basic Documentation | 2 Mb |
Analysis Guides for Pathway Studio 9
These Analysis Guides provide example of more advanced workflows to answer specific biological questions using Pathway Studio 9 and the ResNet 9 Mammalian database, ChemEffect 4 database or the ResNet 4 Plant database.
ResNet 9 Mammalian Database Analysis Guides
Title |
Type |
Size |
File type |
|---|---|---|---|
| PS9 RN9 Analysis Guide: How can I find diseases that are involved in an activation mutation of specific gene? * | Analysis Guide | 191 Kb | |
| PS9 RN9 Analysis Guide: How can I identify main cell-specific regulators for my expression signature? * | Analysis Guide | 312 Kb | |
| PS9 RN9 Analysis Guide: How do I identify candidate biomarkers for drug efficacy monitoring when treating a disease? * | Analysis Guide | 211 Kb | |
| PS9 RN9 Analysis Guide: What cell processes are my protein(s) involved in? * | Analysis Guide | 241 Kb | |
| PS9 RN9 Analysis Guide: What proteins regulate the activity or abundance of my protein? * | Analysis Guide | 353 Kb | |
| PS9 RN9 Analysis Guide: What small molecules are known to regulate my pathway? * | Analysis Guide | 270 Kb | |
| PS9 RN9 Analysis Guide: Which genes are transcriptionally regulated by my protein? * | Analysis Guide | 241 Kb | |
| PS9 RN9 Analysis Guide: How can I find diseases that are involved in the amplification of a specific gene? * | Analysis Guide | 264 Kb |
ChemEffect 4 Analysis Guides
Title |
Type |
Size |
File type |
|---|---|---|---|
| PS9 RN9 CE4 Analysis Guide: Can I identify potential drug-drug interactions mediated by alterations of drug metabolism? * | Basic Documentation | 212 Kb | |
| PS9 RN9 CE4 Analysis Guide: Can I identify potential drug-drug interactions through opposing actions on the drug target? * | Basic Documentation | 301 Kb | |
| PS9 RN9 CE4 Analysis Guide: What are the known and potential side effects of my drug? * | Basic Documentation | 229 Kb |
ResNet 4 Plant Database Analysis Guides
Title |
Type |
Size |
File type |
|---|---|---|---|
| PS9 RN4 Analysis Guide: How can I find candidate genes related to a specific plant trait? * | Basic Documentation | 250 Kb | |
| PS9 RN4 Analysis Guide: How can I find literature supporting a list of gene candidates for improving the production of a specific plant component of interest? * | Basic Documentation | 217 Kb | |
| PS9 RN4 Analysis Guide: How can I analyze expression regulators of genes associated with a particular trait? * | Basic Documentation | 320 Kb | |
| PS9 RN4 Analysis Guide: Which regulated genes from my dataset are reported in literature as being involved in my trait or disease of interest? * | Basic Documentation | 205 Kb | |
| PS9 RN4 Analysis Guide: Which genes are transcriptionally regulated by my protein? * | Basic Documentation | 183 Kb |
