Yes, you can clone an entity in a pathway.  To perform this, first the entity must have multiple relations.  Entity cloning makes a visual copy of...

Yes, you can display your intensity data in a diagram view when you have imported intensity or log-intensity data into Pathway Studio.

Diagrams show the...

This is done by double-clicking on the relationship in the graph view to open the Relation view.

Go to the “Linked Entities” tab (Figure 2) to see the...

1. Open pathway of interest.2. In the Pathway view select Tools > Pathway Reference Summary.      3. Click "Save EndNode..." button...

It is possible to sort the relationships based on the number of references that support that relationship found in the database.  Relationships with a...

Pathway Studio is not designed for operation on a Macintosh with MacOS and Ariadne does not plan to add the support of this operating system in the...

As the proportion of abstracts related to Plant in PubMed is low, it is worthwhile to use the advanced search options available in PubMed to enrich for plant...

In Pathway Studio 6 you cannot put a group in a pathway.  The individual members of a group can be put into the pathway as individual entities.

You can easily select all the relationships for one entity by performing the following steps:

1.  In the pathway view select the entity of...

Yes, you can view two (or more) pathways at the same time.  Simply select: Cascade Document Windows or Tile Document Windows from the Windows menu above...

Functional classes are a recognized type of entity within Pathway Studio.  Relations to the functional class are specifically for the functional class...

Yes.  Pathway Studio does support import for these withdrawn chips, however Ariadne does not have access to the .CDF files, required to analyze these...

Relations are supported by facts extracted from the literature using MedScan, a Natural Language Processing (NLP) tool developed by Ariadne....

Sub-Network Enrichment Analysis (SNEA)

The following steps describe the computational steps performed in SNEA.

1.)  Preparation of Sub-NetworksSNEA...

Pathway Studio comes equipped with multiple layout options: (Cellular) Localization, DirectForce, Hierarchical and Symmetrical. Select Layout on the pathway...

A Functional Class can contain multiple proteins. By default, the color of this entity will be the color of the gene/protein that has the lowest p-value, if...

There are different options to access the literature and the number of references supporting a relation in Pathway Studio:1. From the Graphical View, put your...

You can add a protein to a functional class directly in the public space using an account with ‘Editor’ role and via the webclient (This functionality is...

You can add proteins to an existing functional class or a newly created functional class by doing the following:

1. Open a new pathway and add to the...

In ResNet 7 database, miRNA belongs to the protein entity category. By default, the miRNA shape is an ellipse, the generic protein shape in ResNet. To...