Yes, you can clone an entity in a pathway.  To perform this, first the entity must have multiple relations.  Entity cloning makes a visual copy of...

This is done by double-clicking on the relationship in the graph view to open the Relation view.

Go to the “Linked Entities” tab (Figure 2) to see the...

1. Open pathway of interest.2. In the Pathway view select Tools > Pathway Reference Summary.      3. Click "Save EndNode..." button...

It is possible to sort the relationships based on the number of references that support that relationship found in the database.  Relationships with a...

In Pathway Studio 6 you cannot put a group in a pathway.  The individual members of a group can be put into the pathway as individual entities.

You can easily select all the relationships for one entity by performing the following steps:

1.  In the pathway view select the entity of...

Yes, you can view two (or more) pathways at the same time.  Simply select: Cascade Document Windows or Tile Document Windows from the Windows menu above...

Functional classes are a recognized type of entity within Pathway Studio.  Relations to the functional class are specifically for the functional class...

Yes.  Pathway Studio does support import for these withdrawn chips, however Ariadne does not have access to the .CDF files, required to analyze these...

Relations are supported by facts extracted from the literature using MedScan, a Natural Language Processing (NLP) tool developed by Ariadne....

Pathway Studio comes equipped with multiple layout options: (Cellular) Localization, DirectForce, Hierarchical and Symmetrical. Select Layout on the pathway...

There are different options to access the literature and the number of references supporting a relation in Pathway Studio:1. From the Graphical View, put your...

You can add a protein to a functional class directly in the public space using an account with ‘Editor’ role and via the webclient (This functionality is...

You can add proteins to an existing functional class or a newly created functional class by doing the following:

1. Open a new pathway and add to the...

In ResNet 7 database, miRNA belongs to the protein entity category. By default, the miRNA shape is an ellipse, the generic protein shape in ResNet. To...

By default the font size for the entities on a pathway is set in order that the text fit the smallest entity. To change the font size for the all the...

Font, shape and color of an entity can be modified.1. Select your entity.

2. Click on the button ‘style’ located in the main visualization toolbar from...

Pathway Studio includes canonical metabolic and signaling pathways that have been curated by our scientists.  You can edit, expand, and modify these...

You can customize the layout of these pathways (Figure 1 - Ariadne Metabolic Pathway Example) you have built by performing the following steps:

Step 1 –...

There is two options to export selected entities from a pathway:

Export a selection to Excel from the Entity Table View

1. Select the desired entities in...