The migration procedure is comprised of two major stages – transferring the user data and transferring the license.

1.      Migrating...

When you delete a relation or entity from a pathway view, it is only removed from that specific pathway but still remains in the ResNet database.

To...

There are many places in the interface where you can see information about the connectivity of an entity including:

1.  Mouse over an entity in a pathway...

1. Select all the entities you want to resize on your pathway.- All selected entities will have a blue halo around them.- One of these entities is...

1. First set the style for only one of your entities of interest.- Select one entity

- Click on the button ‘style’ located in the main visualization toolbar...

Usually the number of references which are associated with this relationship gives an indication of the accuracy of the relationship.  As a rough guide,...

Note:  Before upgrading your Pathway Studio 5 desktop installation to Pathway Studio 6, please read the Technical Support Bulletin that describes the data...

Select the file for export and select Export. A menu box appears with 3 export options.  The first two options export the file as a *.gpp file that can...

You can select the members of a pathway that overlap with a group by performing the following steps:

1.  Right-click on the group icon in the explorer...

You can find the intersection between two groups by doing the following:

1.  Right-click on the first group icon in the explorer window and choose...

Follow these steps to find the intersection between two lists of groups: 

1.  Open both list of groups in the list pane (ex. the results of a GSEA...

Select the first group by navigating to the folder where the group resides.  (Figure 1).

Open the file to see the tabular view of all the entities in the...

First, ensure both pathways are in the same folder. Select both pathways (hold the Ctrl button down while successively selecting both with the mouse). Next,...

To find the overlap between the members of a group and the proteins in an experimental data set, do the following:

1.      ...

In the database pane, select Import.  From the drop-down menu select “Gene List”. The following dialog box appears (Figure 1). 

Identifies such...

This can be done by selecting the Save Picture with Legend option (Arrow-Figure 1) and adjusting the resolution in the DPI box (Arrow in Figure 2) from the...

There are four formats to save a pathway image.  There are two ways to open the menu containing these four options.  Figure 1 shows how to access...

You can save a group of entities identified from a database query by the following steps: open a New Group window by selecting “New Group” in the database...

For each of these analysis, the results are displayed in the list pane.  This table of results is not saved in Pathway Studio.

To save the results of any...

You can see reference information for a relationship in a network diagram by placing the cursor over the relationship.  A pop-up box will appear that will...