Showing Category: MedScan Text Mining Tools
Can I optimize the extraction of information from PubMed with MedScan using the Plant Cartridge?
As the proportion of abstracts related to Plant in PubMed is low, it is worthwhile to use the advanced search options available in PubMed to enrich for plant...
How can I import and view a Relation list or an Entity list identified in a MedScan Reader search in Pathway Studio?
When you send information (list of relations or list of entities) from the MedScan Reader search results into Pathway Studio, the information is automatically...
How do I see the reference information that supports a relationship?
You can see reference information for a relationship in a network diagram by placing the cursor over the relationship. A pop-up box will appear that will...
How do I use MedScan to read a document I have on my local drive?
You can use MedScan to extract relationships for an individual file or from all files found in a directory. Files can be html or text or *.pdf documents (note:...
How to Enable the Model Organism Cartridges in MedScan Reader 2.1 (or higher)
Previous to Pathway Studio 6.1, support for the knowledge recovery for model organisms, Drosophila, C.Elegans, and Yeast was “hardcoded” into the MedScan...
What are the definitions of the relationship types?
MolTransport: Indicates that the regulator changes the localization of the target. Describes events of molecular translocation, export, import or...
Why does MedScan reader highlight some entities in the marked up text view but then does not list those same entities in the resultant Entity List in the Current Digest Pane (in the upper right)?
MedScan Reader will mark up all the entities that are recognized in the specific MedScan dictionary that is currently being used. The dictionary contains...
