Yes, you can clone an entity in a pathway.  To perform this, first the entity must have multiple relations.  Entity cloning makes a visual copy of...

1. Open pathway of interest.2. In the Pathway view select Tools > Pathway Reference Summary.      3. Click "Save EndNode..." button...

You can easily select all the relationships for one entity by performing the following steps:

1.  In the pathway view select the entity of...

Yes, you can view two (or more) pathways at the same time.  Simply select: Cascade Document Windows or Tile Document Windows from the Windows menu above...

Yes.  Pathway Studio does support import for these withdrawn chips, however Ariadne does not have access to the .CDF files, required to analyze these...

Sub-Network Enrichment Analysis (SNEA)

The following steps describe the computational steps performed in SNEA.

1.)  Preparation of Sub-NetworksSNEA...

You can add proteins to an existing functional class or a newly created functional class by doing the following:

1.  Open a new pathway and add to the...

There are two different ways that you can change the font size for all the entities at one time:

Advanced Scaling1.  Select Advanced Scaling from the...

To export selected entities from a pathway you must first save them as a group (a group is a list with no relations).  Then you can open the group in the...

Usually the number of references which are associated with this relationship gives an indication of the accuracy of the relationship.  As a rough guide,...

Note:  Before upgrading your Pathway Studio 5 desktop installation to Pathway Studio 6, please read the Technical Support Bulletin that describes the data...

Select the file for export and select Export. A menu box appears with 3 export options.  The first two options export the file as a *.gpp file that can...

You can select the members of a pathway that overlap with a group by performing the following steps:

1.  Right-click on the group icon in the explorer...

You can find the intersection between two groups by doing the following:

1.  Right-click on the first group icon in the explorer window and choose...

Follow these steps to find the intersection between two lists of groups: 

1.  Open both list of groups in the list pane (ex. the results of a GSEA...

Select the first group by navigating to the folder where the group resides.  (Figure 1).

Open the file to see the tabular view of all the entities in the...

To find the overlap between the members of a group and the proteins in an experimental data set, do the following:

1.      ...

In the database pane, select Import.  From the drop-down menu select “Gene List”. The following dialog box appears (Figure 1). 

Identifies such...

This can be done by selecting the Save Picture with Legend option (Arrow-Figure 1) and adjusting the resolution in the DPI box (Arrow in Figure 2) from the...

There are four formats to save a pathway image.  There are two ways to open the menu containing these four options.  Figure 1 shows how to access...