Yes, you can clone an entity in a pathway.  To perform this, first the entity must have multiple relations.  Entity cloning makes a visual copy of...

Yes, you can display your intensity data in a diagram view when you have imported intensity or log-intensity data into Pathway Studio.

Diagrams show the...

1. Open pathway of interest.2. In the Pathway view select Tools > Pathway Reference Summary.      3. Click "Save EndNode..." button...

Pathway Studio is not designed for operation on a Macintosh with MacOS and Ariadne does not plan to add the support of this operating system in the...

As the proportion of abstracts related to Plant in PubMed is low, it is worthwhile to use the advanced search options available in PubMed to enrich for plant...

You can easily select all the relationships for one entity by performing the following steps:

1.  In the pathway view select the entity of...

Yes, you can view two (or more) pathways at the same time.  Simply select: Cascade Document Windows or Tile Document Windows from the Windows menu above...

Functional classes are a recognized type of entity within Pathway Studio.  Relations to the functional class are specifically for the functional class...

Yes.  Pathway Studio does support import for these withdrawn chips, however Ariadne does not have access to the .CDF files, required to analyze these...

MedScan is a Natural Language Processing (NLP) tool that extracts facts from the literature. Extracted information is added in ResNet databases and can be...

Sub-Network Enrichment Analysis (SNEA)

The following steps describe the computational steps performed in SNEA.

1.)  Preparation of Sub-NetworksSNEA...

A Functional Class can contain multiple proteins. By default, the color of this entity will be the color of the gene/protein that has the lowest p-value, if...

There are different options to access the literature and the number of references supporting a relation in Pathway Studio:1. From the graphical view, put your...

You can add proteins to an existing functional class or a newly created functional class by doing the following:

1.  Open a new pathway and add to the...

Mammalian ResNet database

Option1 (recommended)

Backing up pathways and groups that you created in Pathway Studio is the easiest option and is recommended...

There are two different ways that you can change the font size for all the entities at one time:

Advanced Scaling1.  Select Advanced Scaling from the...

Font, shape and color of an entity can be modified.1. Select your entity.

2. Click on the button ‘style’ located in the main visualization toolbar from...

You can customize the layout of these pathways (Figure 1 - Ariadne Metabolic Pathway Example) you have built by performing the following steps:

Step 1 –...

To export selected entities from a pathway you must first save them as a group (a group is a list with no relations).  Then you can open the group in the...

When you send information (list of relations or list of entities) from the MedScan Reader search results into Pathway Studio, the information is automatically...